<?xml version="1.0" encoding="utf-8" ?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom" xmlns:r="https://r-universe.dev"><channel><title>nzkermani.r-universe.dev</title><link>https://nzkermani.r-universe.dev</link><description>Recent package updates in nzkermani</description><generator>R-universe</generator><image><url>https://github.com/nzkermani.png</url><title>R packages by nzkermani</title><link>https://nzkermani.r-universe.dev</link></image><lastBuildDate>Tue, 04 Aug 2026 00:18:46 GMT</lastBuildDate><item><title>[biocstaging] LongOmicsTraj 0.99.0</title><author>nonakermani@gmail.com (Nazanin Zounemat-Kermani)</author><description>Provides methods for estimating, classifying and comparing
longitudinal molecular trajectories across repeated study
visits using empirical, mixed-effects, generalized additive
model and polynomial regression estimators. Consecutive
molecular changes are converted into interpretable Omics
Trajectory Signatures (OTS) describing stable, sustained,
transient and rebound temporal behaviours, enabling topology-
aware clustering and consensus trajectory inference.
LongOmicsTraj further provides a flexible query framework for
directly retrieving molecular features satisfying simple or
complex trajectory definitions, including multi-transition
patterns, logical combinations of trajectory states,
group-specific behaviours, and comparisons of trajectory
topologies across treatment arms, experimental conditions or
other longitudinal study arms.</description><link>https://github.com/r-universe/biocstaging/actions/runs/37116936277</link><pubDate>Tue, 04 Aug 2026 00:18:46 GMT</pubDate><r:package>LongOmicsTraj</r:package><r:version>0.99.0</r:version><r:status>success</r:status><r:repository>https://biocstaging.r-universe.dev</r:repository><r:upstream>https://github.com/BiocStaging/LongOmicsTraj</r:upstream><r:article><r:source>LongOmicsTraj.Rmd</r:source><r:filename>LongOmicsTraj.html</r:filename><r:title>Introduction to LongOmicsTraj</r:title><r:created>2026-06-16 11:44:39</r:created><r:modified>2026-08-03 06:51:32</r:modified></r:article><r:article><r:source>glucold-example.Rmd</r:source><r:filename>glucold-example.html</r:filename><r:title>LongOmicsTraj: a GLUCOLD example</r:title><r:created>2026-08-03 06:51:32</r:created><r:modified>2026-08-04 00:18:46</r:modified></r:article><r:article><r:source>LongOmicsTraj_clustering_vignette.Rmd</r:source><r:filename>LongOmicsTraj_clustering_vignette.html</r:filename><r:title>Topology-aware clustering of longitudinal trajectories with LongOmicsTraj</r:title><r:created>2026-08-04 00:18:46</r:created><r:modified>2026-08-04 00:18:46</r:modified></r:article></item></channel></rss>